SNP Profiles of IMC 14   View Data

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 1234567891011121314
_Input profile
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
1._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
2._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
3._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
4._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
5._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
6._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
7._GC-03-030-3-09
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
8._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
9._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
10._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
11._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
12._IMC_14
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
13._GC-04-054-3-18
CCAGCGTTTTCCTTGTCCCCAAGGCTAA
14._IMC_14
CCAGCGTTTTCCTT_CCCCAAGGCTAA
15._IMC_14
CCAGCGTTTTCCTT_CCCCAAGGCTAA
16._IMC_14
CCAGCGTTTTCCTT_CCCCAAGGCTAA
17._GC-03-030-3-09
CCAGCGTTTTCCTT_CCCCAAGGCTAA
18._GC-03-030-3-09
CCAGCGTTTTCCTT_CCCCAAGGCTAA
19._GC-03-030-3-09
CCAGCGTTTTCCTT_CCCCAAGGCTAA
20._GC-03-030-3-09
CCAGCGTTTT_TT_CCCCAAGGCTAA
21._GC-03-030-3-09
CCAGCGTTTT_TT_CCCCAAGGCTAA
22._IMC_14
CCAGCGTTTT_TT_CCCCAAGGCTAA
23._IMC_14
CCAGCGTTTT_TT_CCCCAAGGCTAA
24._GC-03-030-3-09
CCAGCGTTTT_TT_CCCCAAGGCTAA
25._IMC_14
CCAGCGTTTT_TT_CCCCAAGGCTAA
26._RUQ_1634
__CG____GT_CC_GG_AA
27._IMC_14
CCAGCGTTTTCCTTGTCC_AAGGCTAA
28._RUQ_1634
_AGCGTT___GT____CTAA
29._RUQ_1634
CTAG_CTTTAACCTTCTCTAAAACTAG
30._GC-03-30-3-9
GGAGCGAAAACCAAAA__AAGGAGAA
31._RUQ_1634
GGAGCGAAAACCAAAA__AAGGAGAA
 1516171819202122232425262728
_Input profile
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
1._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
2._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
3._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
4._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
5._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
6._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
7._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
8._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
9._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
10._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
11._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
12._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
13._GC-04-054-3-18
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
14._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
15._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
16._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
17._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
18._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
19._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
20._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
21._GC-03-030-3-09
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
22._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
23._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
24._GC-03-030-3-09
_AAGGCCCCCCGGCCAAGGGGCTCCAA
25._IMC_14
_AAGGCCCCCCGGCCAAGGGGCTCCAA
26._RUQ_1634
_____CCGG_AAGG__CC_
27._IMC_14
TTAAGGCCCCCCGGCCAAGGGGCTCCAA
28._RUQ_1634
____CCCCGGCCAAGGGGCTCCAA
29._RUQ_1634
CTAAGGTTCCGGGGCTCCCCTTCTCCAG
30._GC-03-30-3-9
AAAAGGGGGGGGCCGGAAGGCC_CC_
31._RUQ_1634
AAAAGGGGGGGGCCGGAAGGCC_CC_
 2930313233343536373839   
_Input profile
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
1._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
2._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
3._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
4._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
5._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
6._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
7._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
8._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
9._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
10._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
11._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
12._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
13._GC-04-054-3-18
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
14._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
15._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
16._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
17._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
18._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
19._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
20._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
21._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
22._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
23._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
24._GC-03-030-3-09
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
25._IMC_14
GGAATTAGCGAACTGTACTTGGX_XX_XX_X
26._RUQ_1634
___AG____AC__X_XX_XX_X
27._IMC_14
GGAATTAG_ACCTGTACTTGGX_XX_XX_X
28._RUQ_1634
_AATTAGCGACCTGTAC__X_XX_XX_X
29._RUQ_1634
GGAACTAACCACCTGTCCTTGGX_XX_XX_X
30._GC-03-30-3-9
GGAAAAAGCGACAGACACTTGGX_XX_XX_X
31._RUQ_1634
GGAAAAAGCGACAGACACTTGGX_XX_XX_X

Input profile: IMC_14

 
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Mars Center for Cocoa Science, Brazil
Location: 3309 3
 Dapeng Zhang, 2016

1._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 5
 Dapeng Zhang, 2016

2._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 5
Notes: 5
 Mars, 2018

3._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 3
Notes: 3
 Mars, 2018

4._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 2
Notes: 2
 Mars, 2018

5._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 1
Notes: 1
 Mars, 2018

6._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 9
Notes: 9
 Mars, 2018

7._IMC_14 GC-03-030-3-09

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 11
Notes: 11
 Mars, 2018

8._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 1
 Dapeng Zhang, 2016
Population Assignment: 
View Data
 Dapeng Zhang, 2016

9._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 2
 Dapeng Zhang, 2016

10._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 9
 Dapeng Zhang, 2016

11._IMC_14

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 11
 Dapeng Zhang, 2016

12._IMC_14

identical
39 shared markers

 View  View all  Clone  Any
Mars Center for Cocoa Science, Brazil
Location: 4318 4 > FP
 Dapeng Zhang, 2016

13._IMC_14 GC-04-054-3-18

identical
39 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4 > FP2
 Mars, 2018

14._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 12
 Dapeng Zhang, 2016

15._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 13
 Dapeng Zhang, 2016

16._IMC_14

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 16
 Dapeng Zhang, 2016

17._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 12
Notes: 12
 Mars, 2018

18._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 13
Notes: 13
 Mars, 2018

19._IMC_14 GC-03-030-3-09

identical
38 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 16
Notes: 16
 Mars, 2018

20._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 6
Notes: 6
 Mars, 2018

21._IMC_14 GC-03-030-3-09

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 4
Notes: 4
 Mars, 2018

22._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 4
 Dapeng Zhang, 2016

23._IMC_14

identical
37 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 6
 Dapeng Zhang, 2016

24._IMC_14 GC-03-030-3-09

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Tree: 10
Notes: 10
 Mars, 2018

25._IMC_14

identical
36 shared markers

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Mars Center for Cocoa Science, Brazil
Location: 3309 10
 Dapeng Zhang, 2016

26._IMC_14 RUQ_1634

identical
12 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Lambert Motilal, 2023

27._IMC_14

98.6 %
37 shared markers

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International Cocoa Genebank, Trinidad (ICG,T), Trinidad and Tobago
Location: Marper D600
 Dapeng Zhang, 2016

28._IMC_14 RUQ_1634

97.9 %
24 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2014

29._IMC_14 RUQ_1634

60.5 %
38 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
 Dapeng Zhang, 2016

30._IMC_14 GC-03-30-3-9

52.9 %
35 shared markers

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Mars Center for Cocoa Science, Brazil
Location: Field: 3, Block: 3, Rep: 9, Tree: 1
Notes: MCCS_Structure_refs_above_0.9membership
 Mars, 2018

31._IMC_14 RUQ_1634

52.9 %
35 shared markers

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International Cocoa Quarantine Centre, Reading (ICQC,R), United Kingdom
Notes: Reading_Collection
 Mars, 2018

 

  Key to SNP Markers

1TcSNP1520 2TcSNP1484 3TcSNP1458 4TcSNP1442 5TcSNP1414
6TcSNP1350 7TcSNP1270 8TcSNP1253 9TcSNP1165 10TcSNP1144
11TcSNP1075 12TcSNP1062 13TcSNP1060 14TcSNP998 15TcSNP994
16TcSNP953 17TcSNP929 18TcSNP917 19TcSNP891 20TcSNP872
21TcSNP723 22TcSNP619 23TcSNP591 24TcSNP577 25TcSNP560
26TcSNP534 27TcSNP529 28TcSNP469 29TcSNP429 30TcSNP372
31TcSNP242 32TcSNP230 33TcSNP226 34TcSNP193 35TcSNP151
36TcSNP150 37TcSNP144 38TcSNP32 39TcSNP25